GgaEX0019596 @ galGal3
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77273000-77273985:+
Coord C1 exon
chr2:77273000-77273013
Coord A exon
chr2:77273131-77273215
Coord C2 exon
chr2:77273882-77273985
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTATTTTTTACTTTGACAGAAT
3' ss Score
6.88
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATTTATTGGAAAAA
Seq A exon
AATCGTGTAGTAAGACAAAATCCTGGGGAAAGAAATTATCATATATTTTATGCTCTGCTGGCAGGGATAGAAGAGAGAGAGAAAG
Seq C2 exon
ATGCTTTTTACTTATCTGTACCGGAGAACTACCACTACCTGAATCAGTCTGGATGTATAGTGGATAAGACAATCAGTGACAAGGATTCTTTCAAAGAAGTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(0.6=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]