RnoEX6009027 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77985145-77988279:+
Coord C1 exon
chr2:77985145-77985279
Coord A exon
chr2:77986832-77986956
Coord C2 exon
chr2:77988266-77988279
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCCTCTGTTCACAGCCC
3' ss Score
10.13
5' ss Seq
ATTGTATCC
5' ss Score
-3.5
Exon sequences
Seq C1 exon
TGGTGAAAGCGGGGCAGGGAAAACAGAAAGCACCAAGTTGATCCTCAAGTTTCTGTCCGTCATCAGCCAGCATTCTCTGGACTTGTGCTTACAGGAGAAGTCGTCCAGCGTTGAGCAAGCCATCCTCCAAAGCAG
Seq A exon
CCCGATCATGGAAGCATTTGGCAATGCGAAGACCGTATACAACAACAACTCCAGCCGCTTTGGGAAGTTTGTTCAACTGAACATCTGTCAGAAAGGAAACATTCAGGGCGGAAGAATTGTAGATT
Seq C2 exon
ATTTATTAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.3=100)
C2:
PF0006316=Myosin_head=FE(0.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]