GgaEX6020522 @ galGal3
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77270458-77273013:+
Coord C1 exon
chr2:77270458-77270592
Coord A exon
chr2:77272055-77272179
Coord C2 exon
chr2:77273000-77273013
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCCGTATTTTCGCAGCCC
3' ss Score
7.65
5' ss Seq
ATTGTATCC
5' ss Score
-3.5
Exon sequences
Seq C1 exon
TGGTGTTATTGGTGCTGGTAAGACAGAAAGCACTAAGCTGATTCTCAAGTTCTTGTCTGCAATGAGCCAACATTCGCTGGAGATGTCTTGCAGAGAGAAGACCTTCTGTGTGGAGCAAGCCATTCTTGAGAGCAG
Seq A exon
CCCTATTATGGAAGCTTTTGGCAATGCGAAGACTGTTTACAACAGCAACTCAAGTCGCTTTGGGAAGTTTATTCAGCTGAACATCTGTCAGAAAGGAAACATTCAGGGAGGAAGAATTATAGATT
Seq C2 exon
ATTTATTGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.3=100)
C2:
PF0006316=Myosin_head=FE(0.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]