GgaEX6020522 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75565415-75567970:+
Coord C1 exon
chr2:75565415-75565549
Coord A exon
chr2:75567012-75567136
Coord C2 exon
chr2:75567957-75567970
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCCGTATTTTCGCAGCCC
3' ss Score
7.65
5' ss Seq
ATTGTATCC
5' ss Score
-3.5
Exon sequences
Seq C1 exon
TGGTGAAAGTGGTGCTGGTAAGACAGAAAGCACTAAGCTGATTCTCAAGTTCTTGTCTGCAATGAGCCAACATTCGCTGGAGATGTCTTGCAGAGAGAAGACCTTCTGTGTGGAGCAAGCCATTCTTGAGAGCAG
Seq A exon
CCCTATTATGGAAGCTTTTGGCAATGCGAAGACTGTTTACAACAGCAACTCAAGTCGCTTTGGGAAGTTTATTCAGCTGAACATCTGTCAGAAAGGAAACATTCAGGGAGGAAGAATTATAGATT
Seq C2 exon
ATTTATTGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'19-14,'19-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.3=100)
C2:
PF0006316=Myosin_head=FE(0.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]