DreEX6021801 @ danRer10
Exon Skipping
Gene
ENSDARG00000102802 | brdt
Description
bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
Coordinates
chr6:24280765-24282476:-
Coord C1 exon
chr6:24282384-24282476
Coord A exon
chr6:24282163-24282291
Coord C2 exon
chr6:24280765-24280826
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTTGTGTGTGCAGTTG
3' ss Score
8.76
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
AAAACAAGCCCCCAAAGAAGTCTAAAATCAAGGAAAAGGATAAAGACCTACAACACGCAACTGGAGAACAAAACTCTCATAAAAAGACCAAAA
Seq A exon
TTGAAACTGATGGGGAGATTAAAGACACGACCCATCCTTCTCGTCTGAGTGACAGCAGCAGCAGCTCGTCCAGCTCTGACAGCAGTAGTAGTGACTCTAGCTCCTCTGATAGCTGTGACTCTGATTCAG
Seq C2 exon
AACAGAAAACTAAGAGGAAGCAAAGCAAAGGCCCTGGTCATGCCAACAAAATTAAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102802-'20-22,'20-19,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF057937=TFIIF_alpha=FE(12.8=100),PF045028=DUF572=FE(13.0=100),PF027249=CDC45=FE(20.5=100)
A:
PF057937=TFIIF_alpha=FE(17.7=100),PF045028=DUF572=FE(18.1=100),PF027249=CDC45=FE(28.5=100)
C2:
PF057937=TFIIF_alpha=FE(8.2=100),PF045028=DUF572=FE(8.4=100),PF027249=CDC45=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACAAGCCCCCAAAGAAGTCT
R:
TTCTTTTTAATTTTGTTGGCATGACC
Band lengths:
154-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]