GgaEX1011245 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13246165-13251674:-
Coord C1 exon
chr8:13251561-13251674
Coord A exon
chr8:13250384-13250515
Coord C2 exon
chr8:13246165-13246297
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTTTATTCTGCAGTTG
3' ss Score
10.1
5' ss Seq
CGGGTCAGA
5' ss Score
4.2
Exon sequences
Seq C1 exon
CCAAAAAAGCAATGAAGTCAAAACAACAGCTTCTTTCTGAGAGGAAACAAGAGCTGGAGAAGAGACTACTGGATGTCAATGGTCAGCTAAATCCAAAGAAAGAGAACTTCAAAT
Seq A exon
TTGAAAGTAGTGCTGAGTCCAGTATTGGACCGAGCCGACTGAGTGAAAGCAGCAATGGCAGCAGCTCCTCGGACTCGGGCAGCAACACCAGCAGTGCTTCCAGCTCCTCAGACAGCAGTGACTCTGAATCGG
Seq C2 exon
GTATCCAACGCAACTTTCCCTGTTGACAATGCTGATGGGACTAAAGCTGAAAAAACACTAACTGATCTAGATGAAGTTCAACACAAGGCCAGTGAGAGAACTGCTGACTCAAAATCTATAAACCAAGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.957 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAATGAAGTCAAAACAACAGC
R:
TCTGCTCTTGGTTTATAGATTTTGAG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]