RnoEX6041439 @ rn6
Exon Skipping
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3419425-3429075:-
Coord C1 exon
chr14:3428950-3429075
Coord A exon
chr14:3428701-3428883
Coord C2 exon
chr14:3419425-3419486
Length
183 bp
Sequences
Splice sites
3' ss Seq
TAACGCTCCCTGTTTTGCAGTGG
3' ss Score
6.84
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
CGAAGAAGGTTGTCAGGTCTAAAGAGGAGCTCCATTCTGAAAAAAAGCTGGAGCTGGAGAGGCGGTTGCTGGACGTCAACAATCAGCTGAATTGTAGGAAACGGCAAACGAAACGTCCAGCAAAAG
Seq A exon
TGGAGAAGCTGCCCCCGCCCCCGCCGCCGCCCCCGGAGCTGGCGAGTGGGTCCCGCCTGAGCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCTCGGGGTCCGGGAGCAGCAGCAGTGACTCGAGCTCCTCCGACAGCAGCGATTCAGAACCAG
Seq C2 exon
AAATATCTCCTAAATTTACTGGAGTAAAACAGAATGATTTGCCTTCAAAAGAAAATACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073-'15-17,'15-13,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGAAGGTTGTCAGGTCTA
R:
TTGTATTTTCTTTTGAAGGCAAATCA
Band lengths:
186-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]