HsaEX6032093 @ hg19
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:1105]
Coordinates
chr1:92446825-92456802:+
Coord C1 exon
chr1:92446825-92446938
Coord A exon
chr1:92447175-92447312
Coord C2 exon
chr1:92456741-92456802
Length
138 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCTCTGTTTTGTAGCTG
3' ss Score
9.65
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
CTAAGAAAATAATGATGTCCAAAGAAGAACTTCACTCACAGAAAAAACAGGAATTGGAAAAGCGGTTACTGGATGTTAATAATCAGTTAAATTCTAGAAAACGTCAAACAAAAT
Seq A exon
CTGATAAAACGCAACCATCCAAAGCTGTTGAAAATGTTTCCCGACTGAGTGAGAGCAGCAGCAGCAGCAGCAGCTCATCAGAGTCTGAAAGTAGCAGCAGTGACTTAAGCTCTTCAGACAGCAGTGATTCTGAATCAG
Seq C2 exon
AAATGTTCCCTAAGTTTACAGAAGTAAAACCAAATGATTCTCCTTCTAAAGAGAATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-'31-21,'31-20,32-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCAAAGAAGAACTTCACTCACA
R:
TCTCTTTAGAAGGAGAATCATTTGGT
Band lengths:
154-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)