MmuEX6019336 @ mm10
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107359580-107369364:+
Coord C1 exon
chr5:107359580-107359705
Coord A exon
chr5:107359772-107359987
Coord C2 exon
chr5:107369303-107369364
Length
216 bp
Sequences
Splice sites
3' ss Seq
TAACGCTCCCTGTTTTGCAGTGG
3' ss Score
6.84
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
CAAAGAAGGTTGTCAGGTCTAAGGAGGAGCTCCATTCTGAAAAAAAGCTGGAGCTGGAGAGGCGGTTGCTGGACGTCAACAATCAGCTGAATTGTAGGAAACGGCAAACGAAACGTCCAGCAAAAG
Seq A exon
TGGAGAAGCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCGCCTCCCCCGGAGCTGGCCAGTGGGTCTCGCCTGACCGACAGCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCTCCTCGGGGTCCGCGAGCAGCAGCAGCGACTCGAGCTCCTCCGACAGCAGCGATTCTGAACCAG
Seq C2 exon
AAATATTTCCTAAATTTACTGGAGTAAAACAGAATGATTTACCTCCAAAAGAAAATATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-'21-16,'21-13,22-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGAAGGTTGTCAGGTCTAAGGA
R:
TTTCTTTTGGAGGTAAATCATTCTGT
Band lengths:
180-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types