GgaEX1011246 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13247332-13249487:-
Coord C1 exon
chr8:13249420-13249487
Coord A exon
chr8:13248191-13248383
Coord C2 exon
chr8:13247332-13247444
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTAGTGCCTTGTCTTTGCAGAGA
3' ss Score
9.15
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTATGGAAACGTGCTCAGAACAGAATGGAATAAGGCAAAACTGCCTAACTTCTTTGGAACAGCCTAAG
Seq A exon
AGAACATCACTGTGCTTACAGAGGATGTCCTACAGTGCTGTTCTGCAAGTACAGCCCTCATCTATCACTAGTAGCTTGCAAAACCATGGTTCACCTGAACCACAGCTGTTGTCTCCCACTGTGCTACAGAAGCTTAAGCCTGTACAGAGTAGATCTCTTAAATCAGCAGAACAAAATGCCAAGTCTCCCTCAG
Seq C2 exon
GTATGCTTGCAGGTGTATGTGCTTTGCATGATACTTCAGTCGAGCAAATGCCTCAGACTGCTCCAAGGACAGATCAGCCTTTTGATAACCAGTGTACACAGGCTGTTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031_MULTIEX1-3/4=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.957 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGGAAACGTGCTCAGAACAGA
R:
TGGAACAGCCTGTGTACACTG
Band lengths:
178-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]