GgaEX1011242 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13248283-13250522:-
Coord C1 exon
chr8:13250384-13250522
Coord A exon
chr8:13249420-13249487
Coord C2 exon
chr8:13248283-13248383
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCACCTCACTGAATTTACAGTTA
3' ss Score
6.31
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TCTGCAGTTGAAAGTAGTGCTGAGTCCAGTATTGGACCGAGCCGACTGAGTGAAAGCAGCAATGGCAGCAGCTCCTCGGACTCGGGCAGCAACACCAGCAGTGCTTCCAGCTCCTCAGACAGCAGTGACTCTGAATCGG
Seq A exon
TTATGGAAACGTGCTCAGAACAGAATGGAATAAGGCAAAACTGCCTAACTTCTTTGGAACAGCCTAAG
Seq C2 exon
AGAACATCACTGTGCTTACAGAGGATGTCCTACAGTGCTGTTCTGCAAGTACAGCCCTCATCTATCACTAGTAGCTTGCAAAACCATGGTTCACCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031-'13-13,'13-12,14-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=0.761 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGACCGAGCCGACTGAG
R:
GAGGGCTGTACTTGCAGAACA
Band lengths:
169-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]