RnoEX6041440 @ rn6
Exon Skipping
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3418546-3428883:-
Coord C1 exon
chr14:3428701-3428883
Coord A exon
chr14:3419425-3419486
Coord C2 exon
chr14:3418546-3418720
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTATCTATATATGTTTTCAGAAA
3' ss Score
7.97
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGGAGAAGCTGCCCCCGCCCCCGCCGCCGCCCCCGGAGCTGGCGAGTGGGTCCCGCCTGAGCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCTCGGGGTCCGGGAGCAGCAGCAGTGACTCGAGCTCCTCCGACAGCAGCGATTCAGAACCAG
Seq A exon
AAATATCTCCTAAATTTACTGGAGTAAAACAGAATGATTTGCCTTCAAAAGAAAATACAAAG
Seq C2 exon
CAGATACAGTGTTCTGTGCCCGACATAACCTCTGCTGAAACTGCCCTTGTTCAGCAGAGCACAGGGCCATGTGGAGCTCCAGGGAAGCCTCCCCAGCAGATGCCTGGTTGCCAAGTGCCACACCATCTTCAGGCCACAGAGAGCACTGCGTCTGTGCAGACTCAGCCCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073-'17-18,'17-17,18-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAGCGATTCAGAACCA
R:
CAACCAGGCATCTGCTGGG
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]