MmuEX6019335 @ mm10
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107359772-107370329:+
Coord C1 exon
chr5:107359772-107359987
Coord A exon
chr5:107369303-107369364
Coord C2 exon
chr5:107370158-107370329
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTATCTATATACATTTTCAGAAA
3' ss Score
7.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGGAGAAGCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCGCCTCCCCCGGAGCTGGCCAGTGGGTCTCGCCTGACCGACAGCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCTCCTCGGGGTCCGCGAGCAGCAGCAGCGACTCGAGCTCCTCCGACAGCAGCGATTCTGAACCAG
Seq A exon
AAATATTTCCTAAATTTACTGGAGTAAAACAGAATGATTTACCTCCAAAAGAAAATATAAAG
Seq C2 exon
ATACAATCTTCTGTGCAAGACATAACCTCTGCTGAAGCTCCCCTTGCTCAGCAGAGCACAGCACCATGCGGAGCCCCAGGGAAGCACTCCCAGCAGATGCTTGGTTGCCAAGTGACACAGCATCTGCAGGCCACAGAGAACACTGCATCTGTGCAGACTCAGCCTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-'14-18,'14-16,23-18=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGCGATTCTGAACCAG
R:
CAGATGCTGTGTCACTTGGCA
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types