HsaEX6032092 @ hg38
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:91981618-92002149:+
Coord C1 exon
chr1:91981618-91981755
Coord A exon
chr1:91991184-91991245
Coord C2 exon
chr1:92002049-92002149
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTATGTGTATACATTTGCAGAAA
3' ss Score
8.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGATAAAACGCAACCATCCAAAGCTGTTGAAAATGTTTCCCGACTGAGTGAGAGCAGCAGCAGCAGCAGCAGCTCATCAGAGTCTGAAAGTAGCAGCAGTGACTTAAGCTCTTCAGACAGCAGTGATTCTGAATCAG
Seq A exon
AAATGTTCCCTAAGTTTACAGAAGTAAAACCAAATGATTCTCCTTCTAAAGAGAATGTAAAG
Seq C2 exon
GTGATTCTGAACAGCTCTCAAATGGCATAACTGTGATGCATCCATCTGGTGATAGTGACACAACGATGTTAGAATCTGAATGTCAAGCTCCTGTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948_MULTIEX1-17/22=15-20
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCGACTGAGTGAGAGCA
R:
TGGATGCATCACAGTTATGCCA
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains