HsaEX6032092 @ hg19
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:1105]
Coordinates
chr1:92447175-92457871:+
Coord C1 exon
chr1:92447175-92447312
Coord A exon
chr1:92456741-92456802
Coord C2 exon
chr1:92457821-92457871
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTATGTGTATACATTTGCAGAAA
3' ss Score
8.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGATAAAACGCAACCATCCAAAGCTGTTGAAAATGTTTCCCGACTGAGTGAGAGCAGCAGCAGCAGCAGCAGCTCATCAGAGTCTGAAAGTAGCAGCAGTGACTTAAGCTCTTCAGACAGCAGTGATTCTGAATCAG
Seq A exon
AAATGTTCCCTAAGTTTACAGAAGTAAAACCAAATGATTCTCCTTCTAAAGAGAATGTAAAG
Seq C2 exon
AAAATGAAGAATGAATGCATACCGCCTGAAGGAAGAACAGGCGTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-'32-22,'32-21,33-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCGACTGAGTGAGAGCA
R:
TTCTTCCTTCAGGCGGTATGC
Band lengths:
139-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)