MmuEX6019335 @ mm9
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107788791-107799348:+
Coord C1 exon
chr5:107788791-107789006
Coord A exon
chr5:107798322-107798383
Coord C2 exon
chr5:107799174-107799348
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTATCTATATACATTTTCAGAAA
3' ss Score
7.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGGAGAAGCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCGCCTCCCCCGGAGCTGGCCAGTGGGTCTCGCCTGACCGACAGCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCTCCTCGGGGTCCGCGAGCAGCAGCAGCGACTCGAGCTCCTCCGACAGCAGCGATTCTGAACCAG
Seq A exon
AAATATTTCCTAAATTTACTGGAGTAAAACAGAATGATTTACCTCCAAAAGAAAATATAAAG
Seq C2 exon
CAGATACAATCTTCTGTGCAAGACATAACCTCTGCTGAAGCTCCCCTTGCTCAGCAGAGCACAGCACCATGCGGAGCCCCAGGGAAGCACTCCCAGCAGATGCTTGGTTGCCAAGTGACACAGCATCTGCAGGCCACAGAGAACACTGCATCTGTGCAGACTCAGCCTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-'17-14,'17-13,18-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGCGATTCTGAACCAG
R:
GATGCTGTGTCACTTGGCAAC
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: