GgaEX1011247 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13246165-13248362:-
Coord C1 exon
chr8:13248191-13248362
Coord A exon
chr8:13247332-13247444
Coord C2 exon
chr8:13246165-13246297
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTTCACCCCTTCTTTATCAGGTA
3' ss Score
8.8
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AGGATGTCCTACAGTGCTGTTCTGCAAGTACAGCCCTCATCTATCACTAGTAGCTTGCAAAACCATGGTTCACCTGAACCACAGCTGTTGTCTCCCACTGTGCTACAGAAGCTTAAGCCTGTACAGAGTAGATCTCTTAAATCAGCAGAACAAAATGCCAAGTCTCCCTCAG
Seq A exon
GTATGCTTGCAGGTGTATGTGCTTTGCATGATACTTCAGTCGAGCAAATGCCTCAGACTGCTCCAAGGACAGATCAGCCTTTTGATAACCAGTGTACACAGGCTGTTCCAGAG
Seq C2 exon
GTATCCAACGCAACTTTCCCTGTTGACAATGCTGATGGGACTAAAGCTGAAAAAACACTAACTGATCTAGATGAAGTTCAACACAAGGCCAGTGAGAGAACTGCTGACTCAAAATCTATAAACCAAGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000009708fB5482
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGCAAGTACAGCCCTCA
R:
GCAGTTCTCTCACTGGCCTTG
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]