DreEX6022041 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28104403-28107698:+
Coord C1 exon
chr6:28104403-28104557
Coord A exon
chr6:28105790-28105943
Coord C2 exon
chr6:28107543-28107698
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGACTAAGTTGGCGTGCACCTA
3' ss Score
-8.73
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
Exon sequences
Seq C1 exon
GCCGCCCATCAAAGATGTGAACCGTCAGGTGATATCAAAGAATGCAACACCTGAGAGACTTTGGGCGAACTCCAGAGAGCCCATCAGACAACCTCTGCTCAAGAGACTGGTGGGAAATCCAGATTTAAGCCCGCAAGCCTGCCAGGTTTTCACTG
Seq A exon
CTATTTTGAAGTATATGGGTGATTATCCCACCAGACAGGTTCAGAGCCCTCTGGAGCTCACAGATCAGATCTTTGGCCCACCTACACAAAATGAGGAGCTCCGAGATGAGATCTACTGCCAGATCATGAAGCAAATGACCAGCAATAACAACCG
Seq C2 exon
GTACAGTATAGAGCAAGGCTGGCAGCTGCTGTGGCTTTGCTGTGGTCTTTTCCCTCCCAGTAACTCTCTAATGAAACATGCTCAGCGTTTCATTGAGACACGCAAACGAGAGCCATTGGCCACTGACTGCCTTCAGAGACTGCAGGGGGCTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.192 C2=0.057
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(10.9=100)
A:
PF0037313=FERM_M=FE(10.7=100),PF0078412=MyTH4=PU(34.6=71.2)
C2:
PF0037313=FERM_M=FE(10.9=100),PF0078412=MyTH4=FE(48.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTGGGCGAACTCCAGAG
R:
GCAGTCTCTGAAGGCAGTCAG
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]