RnoEX6058351 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24752647-24754083:-
Coord C1 exon
chr18:24753926-24754083
Coord A exon
chr18:24753331-24753484
Coord C2 exon
chr18:24752647-24752802
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCTTCACGGCCACACCCA
3' ss Score
-3.08
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GGCTCCAGAGAAAGAGACCATCAGCAGGGCGGCGATGCCCATGGCCCGAAGCCGAGGCCATCTATGGGCCTACTCTCCCGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAGCTTCGAGATTCAGCCTGCCAGATCTTCCTTG
Seq A exon
CCATCCTCAAGTACACAGGCGACTACCCATCCCGGCAGTCCTGGCACAGCCTGGAGCTCACAGACCAGATGTTCTCGCTAGCCCTGAAGGAGCCAGCCCTTCAGGACGAGCTCTACTGCCAAATCCTGAAGCAGTTGACCCACAACTCCATCAG
Seq C2 exon
GTTCAGTGAAGAGAGAGCCTGGCAGCTACTGTGGCTCTGCACAGGCCTCTTCCCACCTGGCAAGGCGCTGCTGCCCCATGCCCAGAAGTTCATAGACTCCCGGAAGAAGAAGCCACTAGCTCTCGACTGCAGCCGCAGGCTCCACAGGATTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'46-57,'46-56,47-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078412=MyTH4=PU(34.6=71.2)
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGGCCTACTCTCCCGAG
R:
TAGAATCCTGTGGAGCCTGCG
Band lengths:
251-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]