DreEX6023327 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40395945-40399465:+
Coord C1 exon
chr6:40395945-40396058
Coord A exon
chr6:40398516-40398677
Coord C2 exon
chr6:40399214-40399465
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCCTGGTTGTGTTTTACAGCCT
3' ss Score
8.38
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GTGCGGTCAATGATCAGTGATTTTGCGGTGTTCCTCACCATTGTTTTCATGGTCCTGATTGATTATATCATTGGAGTTCCATCCCAAAAATTACAAGTCCCCAGCAAGTTCAAG
Seq A exon
CCTACACGTGATGATCGTGGTTGGGTGATGAACCCAATTGGGCGCAACCCATGGTGGACAGTACTGGCTGCCTTAATACCAGCTCTCCTCTGCACCATTCTCATCTTCATGGACCAACAGATCACTGCAGTCATTATAAACCGCAAAGAGCACAAACTGGTG
Seq C2 exon
AAAGGCTGTGGGTACCATTTGGATCTGCTGATGGTCGGGGTGATGTTGGCTGTATGTTCTATGTTGGGATTGCCCTGGTTTGTAGCAGCGACCGTCCTGTCAATATCCCACGTCAACAGCCTGAAGCTGGAGTCTGAAAGCTCAGCCCCTGGAGAACAGCCTCGTTTCCTGGGTATTCAAGAACAGAGGCTGACTGGATTGTTTATCTTTCTGCTCATGGGCTGCTCTGTGTTCATGACTGGATTGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(7.2=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTCCCCAGCAAGTTCAA
R:
GCAGCCCATGAGCAGAAAGAT
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]