GgaEX1053622 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:857518-858926:-
Coord C1 exon
chrLGE22C19W28_E50C23:858813-858926
Coord A exon
chrLGE22C19W28_E50C23:858305-858466
Coord C2 exon
chrLGE22C19W28_E50C23:857518-857769
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATGCTGGTGCTTTGTCCCAGCCC
3' ss Score
5.06
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTCCGGTCTACGATAAGTGACTTTGCTGTTTTCCTCACCATCGTCATCATGGTGGTCATTGACTTCCTCATTGGGATCCCATCACCAAAGCTCCACGTCCCCCATATGTTCAAG
Seq A exon
CCCACCAGGGATGACCGTGGGTGGCTCATGAACCCCATAGGACCCAACCCATGGTGGACGGTGTTGGCCGCACTCATCCCAGCTCTGCTCTGCACCATCCTGATATTCATGGACCAGCAGATCACTGCCGTCATTGTGAACAGGAAGGAGCACAGGCTGAAG
Seq C2 exon
AAGGGATGTGGGTACCACCTGGACCTCTTCATGGTGGCTGTGATGCTCGGGGTGTGCTCAGTGATGGGTCTGCCTTGGTTTGTGGCCGCGACCGTCCTCTCCATCACCCACGTGAACAGCCTCAAACTGGAGTCAGGCTGCTCAGCTCCTGGAGAGCAACCCAGATTTTTGGGGATACGAGAGCAGAGGGTCACGGGACTGATGATCTTTGTGCTCATGGGCTGCTCCGTCTTCTTGACCGCTGTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'21-26,'21-23,22-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(7.2=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCATCACCAAAGCTCC
R:
ATCATCAGTCCCGTGACCCTC
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]