RnoEX6034119 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142450397-142454974:+
Coord C1 exon
chr7:142450397-142450510
Coord A exon
chr7:142453379-142453540
Coord C2 exon
chr7:142454723-142454974
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACGCTTGTTTTCTCTCCCAGCCA
3' ss Score
8.14
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
GTTCGCTCCACGGTGAGTGACTTCGCTGTGTTCCTCACCATCTTTACTATGGTGATCCTAGACTTTCTGATTGGCGTCCCCTCGCCCAAGCTTCAGGTCCCCAGCGTGTTCAAG
Seq A exon
CCAACGAGGGATGATCGAGGATGGTTCATTAGTCCCATCGGCCCCAATCCCTGGTGGACCGTGATAGCCGCGATTATCCCAGCTCTCCTGTGCACCATCTTGATATTCATGGACCAGCAGATCACCGCCGTCATCATTAACCGGAAGGAGCACAAGCTCAAG
Seq C2 exon
AAAGGCTGTGGCTACCATCTGGACCTGCTCGTGGTGGCCATCATGCTGGGGGTCTGCTCCCTCATGGGCCTGCCTTGGTTCGTGGCTGCGACCGTGCTGTCCATTACTCATGTGAATAGCCTCAAGCTGGAATCTGAATGCTCTGCTCCGGGGGAGCAGCCTAAGTTTCTGGGCATCCGAGAACAGAGAGTCACGGGCCTCATGATCTTTGTGCTGATGGGCTGCTCCGTCTTCATGACAGCGGTCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'24-27,'24-25,29-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(15.2=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTGATTGGCGTCCCCTC
R:
CCGTGACTCTCTGTTCTCGGA
Band lengths:
248-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]