DreEX6023474 @ danRer10
Exon Skipping
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40755521-40756110:-
Coord C1 exon
chr6:40755972-40756110
Coord A exon
chr6:40755760-40755878
Coord C2 exon
chr6:40755521-40755670
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTGAAATGCTTTTTTCCAGTGG
3' ss Score
4.37
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACAGCCATTGATATTCTGGGCTTCAATGCTGAAGAGAAGGTAGGCATCTACAAGCTGACAGGAGCTGTGATGCATCATGGGAACATGAAGTTCAAGCAGAAGCAGAGGGAGGAGCAGGCTGAGCCTGATGGAACTGAGG
Seq A exon
TGGCTGATAAAATTGCTTACCTCTTGGGACTGAACTCTGCGGACATGCTGAAAGCTTTGTGTTATCCCAGAGTGAAGGTCGGGAATGAATTTGTGACCAAAGGTCAAACTGTTCCTCAG
Seq C2 exon
GTTAACAATGCAACCATGGCTCTGTGCAAGTCTGTCTATGAGAAGATGTTCTTGTGGATGGTTGTACGAATCAATGAGATGCTGGACACCAAACAGCCAAGACAGTTCTTCATCGGAGTGCTTGACATTGCAGGGTTTGAAATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCATTGATATTCTGGGCT
R:
GTCTTGGCTGTTTGGTGTCCA
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]