MmuEX6086307 @ mm9
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67151143-67154810:+
Coord C1 exon
chr11:67151143-67151281
Coord A exon
chr11:67153825-67153943
Coord C2 exon
chr11:67154661-67154810
Length
119 bp
Sequences
Splice sites
3' ss Seq
CATGTCTCCTCTTCCTTCAGTGG
3' ss Score
9.69
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AATGCCATTGACATCCTGGGCTTTAGCCCGGAGGAGAAAGTTGGGATCTACAAGCTGACAGGGGCTGTGATGCATTATGGGAACATGAAGTTCAAACAGAAGCAGAGAGAGGAGCAGGCTGAGCCAGATGGCACGGAAG
Seq A exon
TGGCTGACAAAGCTGGATACCTGATGGGACTGAATTCTGCAGAGATGCTGAAAGGCCTGTGCTGTCCAAGAGTGAAGGTTGGAAATGAGTATGTCACCAAAGGACAGAATGTCCAGCAG
Seq C2 exon
GTGACCAACTCAGTGGGTGCCCTGGCCAAGGCTGTCTATGAGAAGATGTTCCTATGGATGGTCACCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCCGGCAGTACTTCATCGGGGTCTTGGACATCGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGACATCCTGGGCTTT
R:
AGACCCCGATGAAGTACTGCC
Band lengths:
257-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: