BtaEX6087132 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29986910-29989127:-
Coord C1 exon
chr19:29988989-29989127
Coord A exon
chr19:29987732-29987850
Coord C2 exon
chr19:29986910-29987059
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGCGTCTTCTTTTCCTTCAGTGG
3' ss Score
9.68
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AATGCCATTGACATCCTGGGCTTCAGCTCAGAGGAGAAGGTCGGGATCTACAAGCTGACGGGCGCTGTGATGCACTACGGGAACATGAAGTTCAAGCAGAAGCAGCGAGAGGAGCAGGCAGAGCCGGACGGCACAGAAG
Seq A exon
TGGCTGACAAGGCTGGGTACCTGATGGGTCTGAATTCCGCAGAAATGCTGAAAGGCCTGTGCTGTCCAAGGGTGAAGGTTGGGAACGAATATGTCACAAAAGGACAAAACGTCCAGCAG
Seq C2 exon
GTGACCAATTCGGTGGGCGCTCTGGCCAAAGCCGTCTATGAGAAGATGTTCCTGTGGATGGTCACCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATCGGGGTCTTGGACATCGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'9-10,'9-9,10-10=AN
Average complexity
A_C2
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCAGAGGAGAAGGTCG
R:
TGTCCAAGACCCCGATGAAGT
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]