HsaEX6020969 @ hg38
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10345467-10350694:-
Coord C1 exon
chr17:10350556-10350694
Coord A exon
chr17:10346680-10346798
Coord C2 exon
chr17:10345467-10345616
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTCTCTTCCTTCAGTGG
3' ss Score
9.82
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AATGCCATTGACATCCTGGGCTTCAGCTCAGAGGAGAAAGTCGGGATCTACAAACTGACGGGAGCCGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGTGAGGAGCAGGCGGAGCCAGACGGCACCGAAG
Seq A exon
TGGCTGACAAAGCCGGATACCTGATGGGACTGAATTCTGCAGAAATGCTGAAGGGCCTGTGCTGTCCAAGGGTGAAGGTTGGCAATGAATATGTCACTAAAGGGCAAAATGTCCAGCAG
Seq C2 exon
GTGACCAATTCGGTGGGTGCTCTGGCCAAAGCCGTCTACGAGAAGATGTTCCTGTGGATGGTCACCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATCGGGGTCTTGGACATTGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'8-19,'8-13,13-19=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCATATGTGAAACTCAGGC
R:
AGGAGTCTTGGTCTCATTGGGA
Band lengths:
186-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains