Special

DreEX6023497 @ danRer10

Exon Skipping

Gene
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40748373-40748880:-
Coord C1 exon
chr6:40748776-40748880
Coord A exon
chr6:40748588-40748683
Coord C2 exon
chr6:40748373-40748504
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATGTTTTCTGACAGACT
3' ss Score
7.46
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTTCGTGAACTGGAGAGTGAAGTCGAAGCTGAACAGAGACGTGGTGCTGATGCTGTGAAAGGAGTCCGCAAATATGAAAGAAGAGTGAAGGAACTGACTTATCAG
Seq A exon
ACTGAGGAAGATAAGAAGAATATTATTAGACTGCAAGACCTTGTGGACAAACTTCAACTGAAAGTCAAGGCCTACAAGCGACAGAGTGAAGATGCT
Seq C2 exon
GAGGAACAAGCCAATACTCACCTGACCAGATTCAGGAAGGTGCAGCATGAGCTGGAGGAGGCTCAGGAGAGAGCTGACATCGCCGAGTCCCAGGTCAACAAGCTCAGAGCTAAAAGCCGTGAATTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'39-40,'39-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.514 A=0.219 C2=0.773
Domain overlap (PFAM):

C1:
PF0157614=Myosin_tail_1=FE(3.9=100)
A:
PF0157614=Myosin_tail_1=FE(3.6=100)
C2:
PF0157614=Myosin_tail_1=PD(4.6=90.9)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGATGCTGTGAAAGGA
R:
TCTGAGCTTGTTGACCTGGGA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]