MmuEX1017915 @ mm10
Exon Skipping
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67259083-67260446:+
Coord C1 exon
chr11:67259083-67259187
Coord A exon
chr11:67259290-67259385
Coord C2 exon
chr11:67260188-67260446
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGCTGCATCTTTCAGACC
3' ss Score
8.64
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGAGGGAGCTTGAAAACGAGGTGGAAAATGAACAGAAGCGCAACATCGAAGCCGTCAAGGGTCTTCGTAAGCACGAGCGCAGAGTGAAGGAACTCACCTACCAG
Seq A exon
ACCGAGGAGGACCGCAAGAACGTGCTGAGGCTGCAGGACTTGGTGGACAAACTACAGACTAAAGTGAAAGCCTACAAGAGACAGGCTGAGGAGGCT
Seq C2 exon
GAGGAACAATCCAATGTCAACCTGGCCAAGTTCCGTAAGATCCAGCACGAGCTGGAGGAAGCCGAGGAGCGGGCTGACATCGCGGAGTCCCAGGTCAACAAGCTGCGGGTGAAGAGCCGAGAGGTTCACACTAAAGTCATAAGCGAAGAATAATCCATCTTTCTGTTGAGAGGTGACAGGAGAAATCACAAAATGTGACGTTCTTTGTCACTGTCCTGTATATCACGGAAATAAATTCTGCAGATAATTTTGCAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-'69-62,'69-61,72-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.250 C2=0.280
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
PF0157614=Myosin_tail_1=FE(3.6=100)
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAAGGGTCTTCGTAAGC
R:
TGTGAACCTCTCGGCTCTTCA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types