BtaEX6087183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30080604-30082345:-
Coord C1 exon
chr19:30082241-30082345
Coord A exon
chr19:30082041-30082136
Coord C2 exon
chr19:30080604-30080756
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCTACCTCTTTCATCGCAGACT
3' ss Score
8.68
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGAGGGAGCTCGAAAATGAGGTTGAAAATGAACAGAAGCGCAATGCTGAGGCTGTCAAAGGTCTTCGGAAACATGAGAGAAGAGTGAAGGAACTCACTTACCAG
Seq A exon
ACTGAGGAGGACCGCAAGAATGTTCTCAGGCTGCAGGACTTGGTGGACAAGTTACAAAGCAAAGTCAAGGCCTACAAGAGACAAGCTGAAGAGGCT
Seq C2 exon
GAGGAACAATCCAATGTCAATCTTGCCAAATTCCGCAAACTCCAGCACGAGCTGGAGGAGGCTGAGGAACGGGCTGACATTGCCGAGTCCCAGGTCAACAAGCTGCGGGTGAAGAGCCGGGAGGTTCACACAAAAGTCATAAGTGAAGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.250 C2=0.420
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
PF0157614=Myosin_tail_1=FE(3.6=100)
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAGGCTGTCAAAGGTC
R:
CAGCTTGTTGACCTGGGACTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]