DreEX6026963 @ danRer10
Exon Skipping
Gene
ENSDARG00000079564 | vmhc
Description
ventricular myosin heavy chain [Source:ZFIN;Acc:ZDB-GENE-991123-5]
Coordinates
chr2:24602011-24602712:-
Coord C1 exon
chr2:24602608-24602712
Coord A exon
chr2:24602227-24602322
Coord C2 exon
chr2:24602011-24602145
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTATATTTTCTTTTGAAGACT
3' ss Score
7.72
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGAGGGAGCTGGAGAGTGAAGTTGAATCAGAACAGAAGAAGAGCAGTGAGGCGGTGAAAGGAATCCGCAAATATGAGAGACGTATAAAAGAACTGACGTATCAG
Seq A exon
ACTGAGGAGGACCGCAAGAATCTGGCTCGTCTGCAAGATCTGGTTGACAAGCTTCAGCTAAAGGTTAAAGCTTACAAGAGGGCTGCAGAGGAAGCT
Seq C2 exon
GAGGAACAAGCCAACACTAATCTTAGCAAGTTCCGGAAAATCCAGCATGAGCTTGATGAGGCAGAAGAAAGAGCTGACATTGCAGAGTCACAAGTCAATAAGCTACGTGCCAAAAGTCGTGATGTCAGTTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079564-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=0.312 C2=0.956
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100),PF0026115=Tropomyosin=PD(32.8=60.0)
A:
PF0157614=Myosin_tail_1=FE(3.6=100)
C2:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGCTGGAGAGTGAAGT
R:
TCTGCCTCATCAAGCTCATGC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]