HsaEX6021043 @ hg38
Exon Skipping
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10443290-10444899:-
Coord C1 exon
chr17:10444795-10444899
Coord A exon
chr17:10444604-10444699
Coord C2 exon
chr17:10443290-10443527
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTACTTGCACCTCTTTCAGACT
3' ss Score
7.64
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGAGAGAGCTTGAAAGTGAGGTGGAAAGTGAACAGAAGCACAATGTTGAGGCTGTCAAGGGTCTTCGCAAACATGAGAGAAGAGTGAAGGAACTCACTTACCAG
Seq A exon
ACTGAGGAGGACCGCAAGAATATTCTCAGGCTGCAGGACTTGGTGGACAAATTGCAAACCAAAGTCAAAGCTTACAAGAGACAAGCTGAAGAGGCT
Seq C2 exon
GAGGAACAATCCAATGTCAACCTTGCCAAGTTCCGCAAGCTCCAGCACGAGCTGGAGGAGGCCAAGGAACGGGCTGACATTGCTGAGTCCCAAGTCAACAAGCTGAGAGTGAAGAGTCGGGAGGTTCACACAAAAGTCATAAGTGAAGAGTAATTCATTCTAATGAAAGAAAATGTGACCAAAGAAATGCACGAAATGTGAAGTTCTTTGTCACTGTCCTGTATATCAAGGAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424-'37-39,'37-38,38-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.250 C2=0.300
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
PF0157614=Myosin_tail_1=FE(3.6=100)
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAGGCTGTCAAGGGTCT
R:
TCCCGACTCTTCACTCTCAGC
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains