HsaEX6021043 @ hg19
Exon Skipping
Gene
ENSG00000141048 | MYH4
Description
NA
Coordinates
chr17:10346607-10348216:-
Coord C1 exon
chr17:10348112-10348216
Coord A exon
chr17:10347921-10348016
Coord C2 exon
chr17:10346607-10346844
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTACTTGCACCTCTTTCAGACT
3' ss Score
7.64
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGAGAGAGCTTGAAAGTGAGGTGGAAAGTGAACAGAAGCACAATGTTGAGGCTGTCAAGGGTCTTCGCAAACATGAGAGAAGAGTGAAGGAACTCACTTACCAG
Seq A exon
ACTGAGGAGGACCGCAAGAATATTCTCAGGCTGCAGGACTTGGTGGACAAATTGCAAACCAAAGTCAAAGCTTACAAGAGACAAGCTGAAGAGGCT
Seq C2 exon
GAGGAACAATCCAATGTCAACCTTGCCAAGTTCCGCAAGCTCCAGCACGAGCTGGAGGAGGCCAAGGAACGGGCTGACATTGCTGAGTCCCAAGTCAACAAGCTGAGAGTGAAGAGTCGGGAGGTTCACACAAAAGTCATAAGTGAAGAGTAATTCATTCTAATGAAAGAAAATGTGACCAAAGAAATGCACGAAATGTGAAGTTCTTTGTCACTGTCCTGTATATCAAGGAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141048-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.250 C2=0.300
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAGGCTGTCAAGGGTCT
R:
TCCCGACTCTTCACTCTCAGC
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)