BtaEX0023415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30033241-30113709:-
Coord C1 exon
chr19:30113539-30113709
Coord A exon
chr19:30112953-30113048
Coord C2 exon
chr19:30033241-30033345
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACTCTTGGAAATATTTCAGACT
3' ss Score
3.84
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GCAGCCATGATGGCTGAGGAGCTAAAGAAGGAGCAGGACACCAGTGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGACGAAGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCTGGAGGCCAGG
Seq A exon
ACTGAGGAGGACCGCAAGAACATTCTCAGGCTCCAGGATTTGGTGGATAAACTGCAAGCAAAGGTGAAATCTTACAAGAGACAAGCTGAGGAAGCG
Seq C2 exon
GTACGTGAACTTGAAGGAGAGGTTGAAAGTGAGCAGAAGCGTAATGCTGAGGCTATTAAAGGCTTACGGAAACATGAGAGAAAAGTAAAGGAACTCACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.250 C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
PF0157614=Myosin_tail_1=FE(3.6=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAGCGGATGAAGAAGA
R:
GCATTACGCTTCTGCTCACTT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development