BtaEX0023414 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30033241-30113709:-
Coord C1 exon
chr19:30113539-30113709
Coord A exon
chr19:30113168-30113272
Coord C2 exon
chr19:30033241-30033345
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTAAAATACTCATCTTGCAGGTA
3' ss Score
7.62
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAGCCATGATGGCTGAGGAGCTAAAGAAGGAGCAGGACACCAGTGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGACGAAGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCTGGAGGCCAGG
Seq A exon
GTACGTGAACTGGAAGGAGAAGTTGAGAGTGAACAGAAACGCAATGTTGAAGCTGTCAAGGGTCTACGCAAACACGAGAGAAGAGTGAAGGAGCTCACTTACCAG
Seq C2 exon
GTACGTGAACTTGAAGGAGAGGTTGAAAGTGAGCAGAAGCGTAATGCTGAGGCTATTAAAGGCTTACGGAAACATGAGAGAAAAGTAAAGGAACTCACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.800 C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
PF0157614=Myosin_tail_1=FE(4.0=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAGGAGCTAAAGAAGGA
R:
TCTCTCATGTTTCCGTAAGCCT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development