BtaINT0097470 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30058174-30059203:-
Coord C1 exon
chr19:30058994-30059203
Coord A exon
chr19:30058318-30058993
Coord C2 exon
chr19:30058174-30058317
Length
676 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ACTCTCACTTTACTTGCCAGACT
3' ss Score
5.4
Exon sequences
Seq C1 exon
ATGAGTGCGAGTTCAGACGCTGAGATGGCTGTTTTTGGCGAAGCCGCTCCCTACCTTCGAAAATCAGAAAAGGAACGGATTGAAGCCCAAAACAAGCCCTTTGATGCTAAAACATCAGTCTTTGTGGCAGAGCCCAAGGAATCCTATGTGAAGAGCATCATACAAAGCAAGGAAGGGGGGAAAGTAACTGTAAAGACAGAACGTGGAGCA
Seq A exon
GTAAGTAAAAACATAAGGAGAAAATCCTTCCCGTTTTATTTCTCCATCTCCTCACTTCAAGTTGAAGCCTTCCTTGCTCACAATTTCCAAGTCTATTGCCAGTCCAGACACCCTTCCAGTCCATTAACAGACATCAGATTTGGAAGGTAAAAGAAATTCTCACTTCTCCCTTTCCCAACCACCAAAAGAACTTTAAGCCCCTAGTCAGCCTCCAGCATTTCCCTTCCATCACTCACTTCCCAGTCTAAATCTCCAAACCTGGGAGAAATAAAAACTAGTTTCTATCAAAAGAATTATTATCTACTTAGGTAAATAATGCATTAATCTTCCCATTACTTCCTCCCAAATTGAAGTTTCTTATAATAAATGGCAAGGAGAAATAAAAAATTAAACCCATTGAAGTAAAATGATATAAACGGATAAACCTGGGACATGAAAATGTGGGAGGAAAAAAGTAGATTTTAAAGAGTAGGATGTATTCTAGCTCATCACAGGAAACAGATTTTTTTTTTTTACCATCAAACTCTAAGATGAATACATTTTTGTGCTTTTATTTAAAGGACACTGAATAATATAATGGAAAGTGCCCACAATCGTAGTCTTATAACCAAAGCAGATACATATAAATCCTACTTCCAACCATTAATACAAACTTGACTCTCACTTTACTTGCCAG
Seq C2 exon
ACTCTCACTGTCAGAGAAGATCAAGTCTTCCCCATGAACCCTCCCAAATATGACAAGATCGAGGACATGGCCATGATGACCCACCTGCACGAGCCCGGAGTGCTGTACAACCTCAAAGAGCGTTATGCAGCCTGGATGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702:ENSBTAT00000061119:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=47.1)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCAGACGCTGAGATGGC
R:
ATCATCCAGGCTGCATAACGC
Band lengths:
342-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development