RnoINT0096594 @ rn6
Intron Retention
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53820257-53821218:+
Coord C1 exon
chr10:53820257-53820496
Coord A exon
chr10:53820497-53821074
Coord C2 exon
chr10:53821075-53821218
Length
578 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CCACTCTGCTTCCTTACCAGACT
3' ss Score
7.72
Exon sequences
Seq C1 exon
GCCGACACCTCGGCTAAGTAAGTAGCAGCCATGAGTACGGGTTCGGACGCGGAGATGGCTATTTTTGGCGAAGCTGCTCCTTACCTCCGAAAATCGGAGAAGGAGCGGATTGAGGCCCAAAACAAGCCCTTTGATGCCAAAACATCTGTCTTTGTGGCGGAGCCCAAGGAGTCCTATGTGAAGAGCGTCATACAAAGCAAGGAAGGAGGGAAAGTGACCGTTAAGACGGAAAGTGGAGCA
Seq A exon
GTAAGTGAAAACACGGAGGGCGAACTCTGGGGTCATTTCTCCTGTTCAATCTAGAGGCAAAGTCTCCCTCGCTGGGGGTGCCTGAACCTGCAGCCTCATGAGCATCCTACTCCTAGCGTGCAGTCCCAAGATTTGGGAGCTAAAGGGGTTCAGGCTACACTATCTCCCCTTCCCAAAATGCTTGGCCTAGCAAAGGAAAAGAAAAGGAAAAGAAAAATATCTTGTTAAAAACACGAGTAGTACTGCAATAACCATTTGGGTCCCTATTTTGTGTGCCAGTTTCATTTCCTCTGACTATACAAGCAAGGAAGTGGTGGTAGCCGGTTCATGGAGGGCTGGGTGGATTCGATCAATGCGCACTGTGTGGGTGTCTGAAGAACAATCATGCTAAACCTTCTGAATTTGTACAATCAAATGTGTCAATAAAAGTACTAACTCTTATGTTATCGTGGGAAACAGATTTCCTCAGACCAGAAAACAAAGGTACTCAAGCCTCTAAAAGGCATTGAATAACCACCTGGTGGAAAGTGTGTTCAATGTAGCTTTATCTATCTCAAACCACTCTGCTTCCTTACCAG
Seq C2 exon
ACTCTCACCGTCAAGGAAGACCAAGTCTTCCCCATGAACCCTCCCAAATATGACAAGATCGAGGACATGGCCATGATGACCCACCTTCATGAGCCCGGGGTGCTGTATAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042:ENSRNOT00000057260:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=47.1)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCATGAGTACGGGTTC
R:
GATCATCCAGGCTGCGTAACG
Band lengths:
357-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]