MmuINT0103667 @ mm9
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67092330-67093535:+
Coord C1 exon
chr11:67092330-67092568
Coord A exon
chr11:67092569-67093391
Coord C2 exon
chr11:67093392-67093535
Length
823 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CCACCCTGCTTCCTTACCAGACT
3' ss Score
8.1
Exon sequences
Seq C1 exon
CTGAAACCTCGGCTAAATAAGTAGCAGCCATGAGTGCGGGTTCGGACGCGGAGATGGCTATTTTTGGCGAAGCTGCTCCTTACCTCCGAAAATCGGAGAAGGAGAGGATTGAGGCCCAAAATAAGCCTTTTGACGCAAAAACATCTGTCTTTGTGGCGGAGCCCAAGGAGTCTTATGTGAAAAGCGTTATACAAAGCAAGGATGGAGGGAAAGTGACCGTGAAGACGGAAAGTGGAGCA
Seq A exon
GTAAGTGAAAACACAGAGGGCCCTCTCTGGGATCATTTCTCTGGCTCAATCTAGAGGCAAGCTCTTCCTTGCTAAGGATCCTGCGGCCCCATGAATATCCTCCTCCTAGGATTTGGTCCCAAGATTTGGGAGCTAAAGGGGTGCAGGCTACAGAACTCCCCCTTCCCTACTTCCCTCAGGATTCAACTCATCAATTTTGGCCTCCACTATCTTCCTACATTTCCCTACATCTAGGTCTTAATTTCTAAGCCTGTGAAAAAAATAAAACTACCTAGTTCTATCACAAAAGTTCCTGGGCTACTTATGTAGTTCCATAAAGTACTGATAGATTTAAAGAAGTTTCTTGTAATGGGTGGGATGAGAAAAAAATTGAAAATGCTTGGCCTAACAAAAGAGAATAAAAGGAAAAGAAGAGAAATCTCGTTAAATACATGAGTAGTACTGCAATAACCAGGGGTCTTTGGGTCTCTATTTTGTATGCGGGTTTCATTTCCTCTGGGTATACAACAGGGGAAGTGGCAGTTGCTGGTTCATAGAGGGCTAGGTGGACTTGATCAATGCACACTGCATGGGTGTCTGAAAAACAATCATGCTAAACCTCCTGAATTTGTACAATTAAATGTGTCAATAAAAAGCCCTAACTCCTACATTATCACAGGAAACAGATTTTGTTAGCATCAGACCTGAAAATAAATGTGCTCAGGCCTTTAAAAGTCACCGAATAACCATACGAAGCAAACAAAGTGTGCTCAGTTGTAGCTTTAGAACCAAAATGAACAGGCAGACATAAACCCTATCTCAAACCACCCTGCTTCCTTACCAG
Seq C2 exon
ACTCTCACCGTCAAGGAAGATCAAGTCTTCCCCATGAACCCTCCCAAATATGACAAGATCGAGGACATGGCCATGATGACCCACCTCCATGAGCCCGGAGTGCTGTACAACCTCAAAGAGCGTTATGCAGCCTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-Myh8:NM_177369:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=47.1)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(33.7=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTAGCAGCCATGAGTGCG
R:
CCAGGCTGCATAACGCTCTTT
Band lengths:
357-1180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: