GgaINT0128178 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:373670-374139:-
Coord C1 exon
chr18:373902-374139
Coord A exon
chr18:373814-373901
Coord C2 exon
chr18:373670-373813
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
ATTTGCCTTTTCTTTGGCAGACT
3' ss Score
9.5
Exon sequences
Seq C1 exon
ATACTTGCTGCATTACTCCCAATAAACAGCGACGATGGCTACAGATGCTGATATGGCCATATTTGGGGAGGCAGCCCCTTACCTCCGAAAGTCAGAAAAGGAGAGGATTGAGGCCCAGAACAAGCCTTTTGATGCCAAGTCATCAGTCTTTGTGGTACATGCTAAAGAATCCTATGTGAAAAGTACAATCCAGAGTAAAGAATCGGGGAAGGTCACTGTCAAGACTGAAGGTGGTGAA
Seq A exon
GTGAGTAAAAGGCAATATTTACAATGTGAATTCAATTCCCACAGTGGTCTCTGAGCTGACATGCAGGGATTTGCCTTTTCTTTGGCAG
Seq C2 exon
ACTCTAACCGTGAAGGAAGATCAAATCTTCTCCATGAACCCTCCCAAGTACGATAAAATTGAGGACATGGCCATGATGACCCACCTCCACGAACCCGCTGTGCTGTACAACCTCAAAGAGCGTTATGCAGCCTGGATGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023884:ENSGALT00000040060:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=48.5)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGGGAAGGTCACTGTCAA
R:
ATCATCCAGGCTGCATAACGC
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]