BtaEX0023416 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30032625-30113709:-
Coord C1 exon
chr19:30113539-30113709
Coord A exon
chr19:30033241-30033345
Coord C2 exon
chr19:30032625-30032720
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTTCTTGATTGTAGGTA
3' ss Score
8.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAGCCATGATGGCTGAGGAGCTAAAGAAGGAGCAGGACACCAGTGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGACGAAGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCTGGAGGCCAGG
Seq A exon
GTACGTGAACTTGAAGGAGAGGTTGAAAGTGAGCAGAAGCGTAATGCTGAGGCTATTAAAGGCTTACGGAAACATGAGAGAAAAGTAAAGGAACTCACCTACCAG
Seq C2 exon
ACTGAGGAAGATCGCAAGAATGTACTCAGGTTGCAGGACCTGGTAGATAAATTACAAGCGAAGGTGAAGTCATACAAGAGACAAGCTGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGAGCAGGACACCAGT
R:
AGCCTCCTCAGCTTGTCTCTT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development