BtaINT0097496 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30055396-30055689:-
Coord C1 exon
chr19:30055581-30055689
Coord A exon
chr19:30055489-30055580
Coord C2 exon
chr19:30055396-30055488
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTCTTGTGTTTCTCTGCAGGGG
3' ss Score
11.08
Exon sequences
Seq C1 exon
CGGAGAATCTGGGGCAGGAAAGACTGTGAACACGAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGAGAAGAAGAAGGAGGAACCTGGCAAAATGCAG
Seq A exon
GTGGGTCTGATGGGCATGCGAGAATCATGATGGGCAGGGCGCTCAGGAAGCCACGGACTTCCTTGTGTTTCTGCTCTTGTGTTTCTCTGCAG
Seq C2 exon
GGGACTCTGGAGGATCAGATCATCAGTGCCAACCCCCTGCTGGAGGCCTTTGGCAATGCCAAGACCGTGAGGAATGACAATTCCTCTCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702:ENSBTAT00000061119:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGGGCAGGAAAGACTGT
R:
TTCCTCACGGTCTTGGCATTG
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development