HsaINT1024159 @ hg38
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:7578]
Coordinates
chr17:10415292-10415580:-
Coord C1 exon
chr17:10415472-10415580
Coord A exon
chr17:10415385-10415471
Coord C2 exon
chr17:10415292-10415384
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
AACTGCTCCTTCCTTTGCAGGGG
3' ss Score
10.3
Exon sequences
Seq C1 exon
CGGAGAATCTGGTGCCGGAAAGACTGTGAACACCAAGCGTGTCATCCAATACTTTGCAACAATTGCAGTTACTGGAGAGAAGAAGAAGGATGAATCTGGCAAAATGCAG
Seq A exon
GTAGGTCTGATAGCCAGAGTCAAAACCTCTGTCAAGGCTCTCAGACATCTGGAGTCCCAGATGTGAGAACTGCTCCTTCCTTTGCAG
Seq C2 exon
GGGACTCTGGAAGATCAAATCATCAGCGCCAATCCCCTACTGGAGGCCTTTGGCAATGCCAAAACTGTGAGGAATGACAACTCCTCTCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020:ENST00000403437:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATCTGGTGCCGGAAAG
R:
TCCTCACAGTTTTGGCATTGC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains