MmuINT0103681 @ mm9
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67096880-67097171:+
Coord C1 exon
chr11:67096880-67096988
Coord A exon
chr11:67096989-67097078
Coord C2 exon
chr11:67097079-67097171
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GACTGCTCTTTCCCATGTAGGGG
3' ss Score
9.28
Exon sequences
Seq C1 exon
CGGAGAATCCGGGGCCGGGAAGACTGTGAACACGAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGACAAGAAGAAGGAGGAGTCTGGCAAAATGCAG
Seq A exon
GTGGGTCTGGTAGCCTGAATGTGGATCCAGACTGCTATGGTGCCCAGAAGTTTGGATCCCCAGATGCAAAGACTGCTCTTTCCCATGTAG
Seq C2 exon
GGGACCCTGGAAGATCAAATCATCAGTGCTAACCCCCTGCTGGAGGCCTTTGGGAACGCCAAGACCGTGAGGAATGACAACTCATCTCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-Myh8:NM_177369:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGACTGTGAACACGAA
R:
GTCATTCCTCACGGTCTTGGC
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: