GgaINT0132861 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:13402-13686:+
Coord C1 exon
chr19:13402-13510
Coord A exon
chr19:13511-13593
Coord C2 exon
chr19:13594-13686
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGATCTCCACTGACCACCAGGGG
3' ss Score
4.7
Exon sequences
Seq C1 exon
TGGAGAATCCGGAGCGGGGAAGACTGTTAATACCAAGAGGGTCATCCAGTACTTTGCCAGCATTGCCGCCATTGGCGACCGCAAAAAGGAGGTGGCAAATAGCAGCAAG
Seq A exon
GTGGGTCCTCTGGCCATACTCTCTTAGCATCCCACACTTGTGGAGCTACTTGTTCCCTTTCACTGATCTCCACTGACCACCAG
Seq C2 exon
GGGACCCTGGAGGATCAAATCATCCAGGCTAACCCTGCCTTGGAGGCCTTTGGCAATGCCAAGACTGTCCGCAATGACAACTCTTCACGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGGGAAGACTGTTAA
R:
ATTGCGGACAGTCTTGGCATT
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]