MmuINT0103563 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55581523-55581969:-
Coord C1 exon
chr14:55581858-55581969
Coord A exon
chr14:55581616-55581857
Coord C2 exon
chr14:55581523-55581615
Length
242 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CATCTCTGCTCCTTTCACAGGGC
3' ss Score
10.25
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCGGGGAAGACTGTGAACACAAAACGTGTCATCCAGTACTTTGCCAGCATTGCAGCCATAGGGGACCGTAGCAAGAAGGAAAATCCTAATGCAAACAAG
Seq A exon
GTGAGTGTGGGTCATAGGCTCAGCTGAGGCATTGCAGGGAGAAGAGCAGGGCTTGGGAGGGTCGGTGCAGACAATCTTTCTGGCGGGACACACATGCTCTGAGACTTGTGTGGGGCCCAAGGACTAGTCAGCTGTGCATACAGCCTCCCCCTAACCCTGAAGATTTGCTTAGGCTCCCAGCTAACCAGAACCTTCTAGAGGTGAATGGAAGATAAACCCCCACATCTCTGCTCCTTTCACAG
Seq C2 exon
GGCACCCTGGAGGACCAGATTATCCAGGCTAACCCCGCTCTGGAGGCCTTCGGCAACGCCAAGACTGTCCGGAATGACAACTCCTCCCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGGGAAGACTGT
R:
AAAGCGGGAGGAGTTGTCATT
Band lengths:
196-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: