RnoINT0096521 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33626506-33626952:-
Coord C1 exon
chr15:33626841-33626952
Coord A exon
chr15:33626599-33626840
Coord C2 exon
chr15:33626506-33626598
Length
242 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATTTCTGCTCCTTTCACAGGGC
3' ss Score
9.38
Exon sequences
Seq C1 exon
TGGAGAATCCGGAGCGGGGAAGACTGTCAACACGAAGCGTGTCATCCAGTACTTTGCTAGCATTGCAGCCATAGGGGACCGTAGCAAGAAGGACAATCCTAATGCAAACAAG
Seq A exon
GTGAGCATGGGTCACAGGCTCAGCCGAGGAGACGCAGGGAGAAGAGCAGGGCTTGGAAGGGTCAGTACAGAAGATCCTCCTGAGGGAACACACATGCTCTGAGACCTCTGTGGGGCCTGAGGACTTCCTAGCTGTACAACCAGCTTCACCCTACCCCTGAGAATCAGTTTAGGCTTCCGCCAACCAAAACCATCTAGAGATGAATGAAAGATGAACCCCCCTAATTTCTGCTCCTTTCACAG
Seq C2 exon
GGCACCCTGGAGGACCAGATTATCCAGGCTAACCCTGCTCTGGAGGCCTTTGGCAACGCCAAGACTGTCCGGAATGACAACTCCTCCCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGGGAAGACTGTC
R:
AAAGCGGGAGGAGTTGTCATT
Band lengths:
196-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]