BtaINT0097348 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21353153-21353493:+
Coord C1 exon
chr10:21353153-21353263
Coord A exon
chr10:21353264-21353400
Coord C2 exon
chr10:21353401-21353493
Length
137 bp
Sequences
Splice sites
5' ss Seq
GACCTTCCC
5' ss Score
-24.27
3' ss Seq
ACGCTCTGCCCCCTCTGCAGGGC
3' ss Score
9.19
Exon sequences
Seq C1 exon
AGGTGGGCTGCAGGCTCAAGAGAGGGGGTTAGGGGGCAGGCTGACCAGATGACCCCTAGCCCTGCCCTGGGGAACAGTGCAGACAGCATCCCTGAGCCCAGTGCCCGAGAC
Seq A exon
CTTCCCGGCAGGAGACATGCTCTGAGGTCTGAATATGGCCCTCTCGAGCTGCAGACCACCAGCAGTCCATCCCACTCCACCCCCACCCTCCCCAGCACCACCTGGAGGTGAAGCCCCACGCTCTGCCCCCTCTGCAG
Seq C2 exon
GGCACCCTGGAGGACCAGATCATCCAGGCCAACCCCGCCCTGGAGGCCTTCGGCAACGCCAAGACCGTCAGGAATGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTCAAGAGAGGGGGTTA
R:
GAAGCGGGAGGAGTTGTCATT
Band lengths:
194-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development