GgaINT0132861 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:8700-8984:+
Coord C1 exon
chr19:8700-8808
Coord A exon
chr19:8809-8885
Coord C2 exon
chr19:8886-8984
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTTCACTGATCTCCACTGACCAC
3' ss Score
-15.95
Exon sequences
Seq C1 exon
TGGAGAATCCGGAGCGGGGAAGACTGTTAATACCAAGAGGGTCATCCAGTACTTTGCCAGCATTGCCGCCATTGGCGACCGCAAAAAGGAGGTGGCAAATAGCAGCAAG
Seq A exon
GTGGGTCCTCTGGCCATACTCTCTTAGCATCCCACACTTGTGGAGCTACTTGTTCCCTTTCACTGATCTCCACTGAC
Seq C2 exon
CACCAGGGGACCCTGGAGGATCAAATCATCCAGGCTAACCCTGCCTTGGAGGCCTTTGGCAATGCCAAGACTGTCCGCAATGACAACTCTTCACGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGGGAAGACTGTTAA
R:
ATTGCGGACAGTCTTGGCATT
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]