DreINT0180447 @ danRer10
Intron Retention
Gene
ENSDARG00000095217 | zgc:66156
Description
zgc:66156 [Source:ZFIN;Acc:ZDB-GENE-040426-1554]
Coordinates
chr22:247572-247859:-
Coord C1 exon
chr22:247745-247859
Coord A exon
chr22:247665-247744
Coord C2 exon
chr22:247572-247664
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
ATTTTAACCTAACTCACCAGGGG
3' ss Score
6
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCAGGAAAGACTGTCAACACCAAACGTGTCATTCAGTACTTTGCAACAATTGCTGTGTCTGGAGGAGCAAAGAAGCAAGAACCTGTCCCAGGCAAAATGCAG
Seq A exon
GTGAAAACACTAAACAGTAAAACATAATCTAAAGCAAAAGAGACAAAGTTATTCTATATGATTTTAACCTAACTCACCAG
Seq C2 exon
GGGTCACTGGAGGATCAAATCATTGCTGCAAACCCTCTGCTGGAGGCTTATGGTAATGCCAAGACTGTGAGGAATGACAACTCCTCTCGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095217:ENSDART00000075210:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCAGGAAAGACTGTCA
R:
GGCATTACCATAAGCCTCCAGC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]