MmuEX7006815 @ mm10
Exon Skipping
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67305835-67306972:+
Coord C1 exon
chr11:67305835-67306005
Coord A exon
chr11:67306154-67306258
Coord C2 exon
chr11:67306877-67306972
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTCTTGGTTACAGGTA
3' ss Score
10.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACATGGAACAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
Seq A exon
GTACGTGAACTTGAAGGAGAGGTCGAAAATGAACAGAAACGCAATGCTGAGGCTGTTAAAGGGTTAAGGAAGCATGAAAGAAGAGTAAAGGAACTTACCTACCAG
Seq C2 exon
ACTGAGGAAGACCGCAAGAATGTGCTCCGGCTGCAGGACCTGGTGGACAAATTACAGGCGAAGGTGAAATCCTACAAGAGACAGGCTGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-'31-41,'31-39,42-41=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=1.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
PF0157614=Myosin_tail_1=FE(4.0=100)
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGAGCAGGACACCA
R:
CCTCCTCAGCCTGTCTCTTGT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types