DreEX6026985 @ danRer10
Exon Skipping
Gene
ENSDARG00000079782 | vmhcl
Description
ventricular myosin heavy chain-like [Source:ZFIN;Acc:ZDB-GENE-061027-393]
Coordinates
chr2:24619948-24620636:-
Coord C1 exon
chr2:24620340-24620636
Coord A exon
chr2:24620144-24620248
Coord C2 exon
chr2:24619948-24620043
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTAATGGATCAATCCTAGGTC
3' ss Score
5.33
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
AACACCAGTCTCATAAATCAAAAGAAGAAGCTGGAGACGGATTTATCCCAGTTTCAGACAGAAGTGGAAGAGGCAGTGCAAGAATGCAGGAATGCTGAGGAAAAAGCCAAGAAGGCCATCACTGATGCTGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGATACAAGTGCTCACCTGGAGAGGATGAAGAAGAACATGGAGCAGACCATTAAGGACCTGCAGCATCGCCTGGATGAAGCAGAACAAATCGCTATGAAGGGAGGAAAGAAACAAGTCCAGAAACTGGAGGCCAGG
Seq A exon
GTCAGAGAGCTGGAATGCGAAGTTGAGGCCGAACAGAAGAGAAGCAGCGAATCTGTGAAGGGAATCCGTAAATATGAACGCCGCATCAAGGAACTTACTTATCAG
Seq C2 exon
ACTGAAGAGGACCGTAAAAACATAGCCCGTCTTCAGGATTTGGTTGACAAGCTGCAACTAAAAGTCAAAGCTTACAAAAGAGCTGCAGAGGAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079782-'44-57,'44-55,45-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.747 A=0.200 C2=0.125
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.4=100),PF0003816=Filament=PD(63.6=91.9)
A:
PF0157614=Myosin_tail_1=FE(4.0=100)
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAATGCTGAGGAAAAAGC
R:
AACCAAATCCTGAAGACGGGC
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]